UG14_0310panel1

panel1 时间:2021-01-06 阅读:()

"Genome-wideassociationmappingandgenomicpredictionforCBSDresistanceinManihotesculenta",,,,,,,,,,,,,,,,"SirajIsmailKayondo1,2*,DuniaPinoDelCarpio3+,RobertoLozano3,AlfredOzimati1,3,MarninWolfe3,YonaBaguma1,VernonGracen2,3,SamuelOffei2,MoragFerguson5,RobertKawuki1andJean-LucJannink3,4",,,,,,,,,,,,,,,,"1NationalCropResourcesResearchInstitute,NaCRRI,P.
O.
Box,7084Kampala,Uganda""2WestAfricaCenterforCropImprovement,(WACCI),UniversityofGhana,Ghana""3SchoolofIntegrativePlantSciences,SectiononPlantbreedingandGenetics,CornellUniversity,Ithaca,NewYork,USA""4USDepartmentofAgriculture–AgriculturalResearchService(USDA-ARS),USA""5InternationalInstituteforTropicalAgriculture(IITA),Nairobi,Kenya""*Correspondingauthor:skayondo@wacci.
edu.
gh""+Theseauthorscontributedequallytothiswork""SupplementaryTableS1.
PedigreeinformationfromGWASpanels1and2.
Detailsareshownontheparentallinesperclone.
Thetraitcombinationsarebasedontraitdefinationsfromthematernalside.
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CorrelationanalysisamonglocationsforCBSDseveritypanel1andpanel2.
(A)CorrelationofderegressedBLUPsacrosslocationswithintraitsinpanel1measuredinthreelocations.
(B)CorrelationofderegressedBLUPsacrosslocationswithintraitsinpanel2measuredinthreelocations.
",,,,,,,,,,,,,,,,,,,,,,,,"(A)","Panel1","(i)CBSD3S",,,,,,"KASESE","NAMULONGE","NGETTA",,,"KASESE","1","0.
3292187","0.
4329038",,,"NAMULONGE","0.
3292187","1","0.
4060116",,,"NGETTA","0.
4329038","0.
4060116","1",,,,,,,,,,"(ii)CBSD6S",,,,,,"KASESE","NAMULONGE","NGETTA",,,"KASESE","1","0.
4158007","0.
3581971",,,"NAMULONGE","0.
4158007","1","0.
4082128",,,"NGETTA","0.
3581971","0.
4082128","1",,,,,,,,,,"(ii)CBSDRS",,,,,,"KASESE","NAMULONGE","NGETTA",,,"KASESE","1","0.
6012484","0.
09014094",,,"NAMULONGE","0.
6012484","1","0.
2745834",,,"NGETTA","0.
09014094","0.
2745834","1",,,,,,,,,,,,,,,,,,,,,"",,,,,"(B)","Panel2","(i)CBSD3S",,,,,,"KAMULI","SERERE","NAMULONGE",,,"KAMULI","1","0.
5072435","0.
06526054",,,"SERERE","0.
5072435","1","0.
1005926",,,"NAMULONGE","0.
06526054","0.
1005926","1",,,,,,,,,,"(ii)CBSD6S",,,,,,"KAMULI","SERERE","NAMULONGE",,,"KAMULI","1","0.
3818901","0.
2458548",,,"SERERE","0.
3818901","1","0.
3130197",,,"NAMULONGE","0.
2458548","0.
3130197","1",,,,,,,,,,"(iii)CBSD9S",,,,,,"KAMULI","SERERE","NAMULONGE",,,"KAMULI","1","0.
1428249","-0.
07960887",,,"SERERE","0.
1428249","1","-0.
04216414",,,"NAMULONGE","-0.
07960887","-0.
04216414","1",,,,,,,,,,"(iv)CBSDRS",,,,,,"KAMULI","SERERE","NAMULONGE",,,"KAMULI","1","0.
2607177","0.
2273285",,,"SERERE","0.
2607177","1","0.
2572837",,,"NAMULONGE","0.
2273285","0.
2572837","1",,,,,,,,,"Nam=Namulonge,Kas=Kasese,Nge=Ngetta,Kam=Kamuli,Ser=Serere,MAP=Monthsafterplanting,CBSD3S=CBSDseverityscoredat3MAP,CBSD6S=CBSDseverityscoredat6MAP,CBSDRS=CBSDseverityscoredat12MAP",,,,,,,,,"SuplementaryTableS3:CorrelationCoefficientvalueswithinlocationsandtraitsinpanel1andpanel2.
(A)CorrelationofderegressedBLUPsacrosslocationsandtraitsinpanel1measuredinthreelocations.
(B)CorrelationofderegressedBLUPsacrosslocationsandfourtraitsinpanel2measuredinthreelocations",,,,,,"(A)","Panel1",,,,,,"Nam.
CBSD3S","Nam.
CBSD6S","Nam.
CBSDRS",,"Nam.
CBSD3S","1","0.
5198757","0.
03493193",,"Nam.
CBSD6S","0.
51987574","1","0.
22720074",,"Nam.
CBSDRS","0.
03493193","0.
2272007","1",,,,,,,,,,,,,"Kas.
CBSD3S","Kas.
CBSD6S","Kas.
CBSDRS",,"Kas.
CBSD3S","1","0.
5258192","-0.
1106185",,"Kas.
CBSD6S","0.
5258192","1","-0.
0835297",,"Kas.
CBSDRS","-0.
1106185","-0.
0835297","1",,,,,,,,,,,,,"Nge.
CBSD3S","Nge.
CBSD6S","Nge.
CBSDRS",,"Nge.
CBSD3S","1","0.
6313906","0.
2963013",,"Nge.
CBSD6S","0.
6313906","1","0.
3892253",,"Nge.
CBSDRS","0.
2963013","0.
3892253","1",,,,,,"(B)","Panel2",,,,,,"Kam.
CBSD3S","Kam.
CBSD6S","Kam.
CBSD9S","Kam.
CBSDRS","Kam.
CBSD3S","1","0.
3241668","0.
4777381","0.
1948779","Kam.
CBSD6S","0.
3241668","1","0.
4557355","0.
2371441","Kam.
CBSD9S","0.
4777381","0.
4557355","1","0.
2761836","Kam.
CBSDRS","0.
1948779","0.
2371441","0.
2761836","1",,,,,,,,,,,,"Nam.
CBSD3S","Nam.
CBSD6S","Nam.
CBSD9S","Nam.
CBSDRS","Nam.
CBSD3S","1","0.
365052433","-0.
02737687","0.
13714521","Nam.
CBSD6S","0.
36505243","1","-0.
002066201","0.
08096181","Nam.
CBSD9S","-0.
02737687","-0.
002066201","1","-0.
2219362","Nam.
CBSDRS","0.
13714521","0.
080961806","-0.
221936203","1",,,,,,,,,,,,"Ser.
CBSD3S","Ser.
CBSD6S","Ser.
CBSD9S","Ser.
CBSDRS","Ser.
CBSD3S","1","0.
37711546","0.
183976","0.
06793273","Ser.
CBSD6S","0.
37711546","1","0.
06871707","0.
24437888","Ser.
CBSD9S","0.
183976","0.
06871707","1","0.
03465921","Ser.
CBSDRS","0.
06793273","0.
24437888","0.
03465921","1","Nam=Namulonge,Kas=Kasese,Nge=Ngetta,Kam=Kamuli,Ser=Serere,MAP=Monthsafterplanting,CBSD3S=CBSDseverityscoredat3MAP,CBSD6S=CBSDseverityscoredat6MAP,CBSDRS=CBSDseverityscoredat12MAP",,,,"SupplementaryTableS4:SNPssugnificantlyassociatedwithCBSDresistancethroughgenome-wideassociationandtheirpredictedcandidategenesat;3MAP,6MAP,9MAPandCBSDRS(roots)forbothPanel1and2.
",,,"(a)PredictedcandidategenesandassociatedSNPsforPanel1at3MAP""Chromosome","Annotatedgene(ContainsIDsfrom;versions6cassavagenome,phytozomeandversions4cassavagenome)","AssociatedSNP",,"11","ID=Manes.
11G103900.
v6.
1;Name=Manes.
11G103900;ancestorIdentifier=cassava4.
1_023954m.
g.
v4.
1","S11_18893900""11","ID=Manes.
11G104100.
v6.
1;Name=Manes.
11G104100","S11_18986599""11","ID=Manes.
11G105300.
v6.
1;Name=Manes.
11G105300;ancestorIdentifier=cassava4.
1_021582m.
g.
v4.
1","S11_19286159""11","ID=Manes.
11G105500.
v6.
1;Name=Manes.
11G105500","S11_19343483""11","ID=Manes.
11G105500.
v6.
1;Name=Manes.
11G105500","S11_19343507""11","ID=Manes.
11G105500.
v6.
1;Name=Manes.
11G105500","S11_19366766""11","ID=Manes.
11G105500.
v6.
1;Name=Manes.
11G105500","S11_19366851""11","ID=Manes.
11G107500.
v6.
1;Name=Manes.
11G107500","S11_19872305""11","ID=Manes.
11G108600.
v6.
1;Name=Manes.
11G108600;ancestorIdentifier=cassava4.
1_000863m.
g.
v4.
1","S11_20112445""11","ID=Manes.
11G108800.
v6.
1;Name=Manes.
11G108800","S11_20139319""11","ID=Manes.
11G109500.
v6.
1;Name=Manes.
11G109500","S11_20265066""11","ID=Manes.
11G109500.
v6.
1;Name=Manes.
11G109500","S11_20265143""11","ID=Manes.
11G110800.
v6.
1;Name=Manes.
11G110800;ancestorIdentifier=cassava4.
1_024282m.
g.
v4.
1","S11_20554366""11","ID=Manes.
11G111300.
v6.
1;Name=Manes.
11G111300;ancestorIdentifier=cassava4.
1_032419m.
g.
v4.
1","S11_20706928""11","ID=Manes.
11G112500.
v6.
1;Name=Manes.
11G112500;ancestorIdentifier=cassava4.
1_013401m.
g.
v4.
1","S11_20950074""11","ID=Manes.
11G112600.
v6.
1;Name=Manes.
11G112600;ancestorIdentifier=cassava4.
1_004384m.
g.
v4.
1","S11_20975872""11","ID=Manes.
11G113800.
v6.
1;Name=Manes.
11G113800;ancestorIdentifier=cassava4.
1_019845m.
g.
v4.
1","S11_21567735""11","ID=Manes.
11G114100.
v6.
1;Name=Manes.
11G114100;ancestorIdentifier=cassava4.
1_000763m.
g.
v4.
1","S11_21630613""11","ID=Manes.
11G115000.
v6.
1;Name=Manes.
11G115000;ancestorIdentifier=cassava4.
1_031131m.
g.
v4.
1","S11_21934849""11","ID=Manes.
11G115300.
v6.
1;Name=Manes.
11G115300;ancestorIdentifier=cassava4.
1_009915m.
g.
v4.
1","S11_21984488""11","ID=Manes.
11G115700.
v6.
1;Name=Manes.
11G115700;ancestorIdentifier=cassava4.
1_005125m.
g.
v4.
1","S11_22049997""11","ID=Manes.
11G116000.
v6.
1;Name=Manes.
11G116000","S11_22094095""11","ID=Manes.
11G117400.
v6.
1;Name=Manes.
11G117400;ancestorIdentifier=cassava4.
1_012889m.
g.
v4.
1","S11_22304418""11","ID=Manes.
11G118300.
v6.
1;Name=Manes.
11G118300;ancestorIdentifier=cassava4.
1_004758m.
g.
v4.
1","S11_22459557""11","ID=Manes.
11G121000.
v6.
1;Name=Manes.
11G121000;ancestorIdentifier=cassava4.
1_033047m.
g.
v4.
1","S11_22964111""11","ID=Manes.
11G121000.
v6.
1;Name=Manes.
11G121000;ancestorIdentifier=cassava4.
1_033047m.
g.
v4.
1","S11_22964131""11","ID=Manes.
11G121200.
v6.
1;Name=Manes.
11G121200;ancestorIdentifier=cassava4.
1_030740m.
g.
v4.
1","S11_23002709""11","ID=Manes.
11G121200.
v6.
1;Name=Manes.
11G121200;ancestorIdentifier=cassava4.
1_030740m.
g.
v4.
1","S11_23002741""11","ID=Manes.
11G121300.
v6.
1;Name=Manes.
11G121300","S11_23018912""11","ID=Manes.
11G122000.
v6.
1;Name=Manes.
11G122000;ancestorIdentifier=cassava4.
1_015068m.
g.
v4.
1","S11_23134278""11","ID=Manes.
11G123000.
v6.
1;Name=Manes.
11G123000;ancestorIdentifier=cassava4.
1_000375m.
g.
v4.
1","S11_23227865""11","ID=Manes.
11G123000.
v6.
1;Name=Manes.
11G123000;ancestorIdentifier=cassava4.
1_000375m.
g.
v4.
1","S11_23227874""11","ID=Manes.
11G123000.
v6.
1;Name=Manes.
11G123000;ancestorIdentifier=cassava4.
1_000375m.
g.
v4.
1","S11_23228231""11","ID=Manes.
11G123100.
v6.
1;Name=Manes.
11G123100","S11_23234723""11","ID=Manes.
11G123100.
v6.
1;Name=Manes.
11G123100","S11_23234841""11","ID=Manes.
11G123100.
v6.
1;Name=Manes.
11G123100","S11_23234863""11","ID=Manes.
11G123100.
v6.
1;Name=Manes.
11G123100","S11_23235864""11","ID=Manes.
11G123100.
v6.
1;Name=Manes.
11G123100","S11_23235964""11","ID=Manes.
11G123100.
v6.
1;Name=Manes.
11G123100","S11_23238187""11","ID=Manes.
11G123100.
v6.
1;Name=Manes.
11G123100","S11_23238224""11","ID=Manes.
11G123200.
v6.
1;Name=Manes.
11G123200;ancestorIdentifier=cassava4.
1_031128m.
g.
v4.
1","S11_23234723""11","ID=Manes.
11G123200.
v6.
1;Name=Manes.
11G123200;ancestorIdentifier=cassava4.
1_031128m.
g.
v4.
1","S11_23234841""11","ID=Manes.
11G123200.
v6.
1;Name=Manes.
11G123200;ancestorIdentifier=cassava4.
1_031128m.
g.
v4.
1","S11_23234863""11","ID=Manes.
11G123200.
v6.
1;Name=Manes.
11G123200;ancestorIdentifier=cassava4.
1_031128m.
g.
v4.
1","S11_23235864""11","ID=Manes.
11G123200.
v6.
1;Name=Manes.
11G123200;ancestorIdentifier=cassava4.
1_031128m.
g.
v4.
1","S11_23235964""11","ID=Manes.
11G125400.
v6.
1;Name=Manes.
11G125400","S11_23435609""11","ID=Manes.
11G125500.
v6.
1;Name=Manes.
11G125500","S11_23453538""11","ID=Manes.
11G126000.
v6.
1;Name=Manes.
11G126000","S11_23547834""11","ID=Manes.
11G127100.
v6.
1;Name=Manes.
11G127100;ancestorIdentifier=cassava4.
1_028097m.
g.
v4.
1","S11_23751929""11","ID=Manes.
11G128700.
v6.
1;Name=Manes.
11G128700;ancestorIdentifier=cassava4.
1_005491m.
g.
v4.
1","S11_23944054""11","ID=Manes.
11G129000.
v6.
1;Name=Manes.
11G129000","S11_23978170""11","ID=Manes.
11G129900.
v6.
1;Name=Manes.
11G129900;ancestorIdentifier=cassava4.
1_000426m.
g.
v4.
1","S11_24155828""11","ID=Manes.
11G130000.
v6.
1;Name=Manes.
11G130000;ancestorIdentifier=cassava4.
1_024215m.
g.
v4.
1","S11_24161059""11","ID=Manes.
11G130200.
v6.
1;Name=Manes.
11G130200;ancestorIdentifier=cassava4.
1_015979m.
g.
v4.
1","S11_24185903""11","ID=Manes.
11G130500.
v6.
1;Name=Manes.
11G130500","S11_24197620""11","ID=Manes.
11G131500.
v6.
1;Name=Manes.
11G131500;ancestorIdentifier=cassava4.
1_003125m.
g.
v4.
1","S11_24332904""11","ID=Manes.
11G131900.
v6.
1;Name=Manes.
11G131900;ancestorIdentifier=cassava4.
1_033611m.
g.
v4.
1","S11_24372646""11","ID=Manes.
11G132400.
v6.
1;Name=Manes.
11G132400;ancestorIdentifier=cassava4.
1_024866m.
g.
v4.
1","S11_24425364""11","ID=Manes.
11G132400.
v6.
1;Name=Manes.
11G132400;ancestorIdentifier=cassava4.
1_024866m.
g.
v4.
1","S11_24425401""11","ID=Manes.
11G133000.
v6.
1;Name=Manes.
11G133000;ancestorIdentifier=cassava4.
1_010591m.
g.
v4.
1","S11_24459243""11","ID=Manes.
11G133000.
v6.
1;Name=Manes.
11G133000;ancestorIdentifier=cassava4.
1_010591m.
g.
v4.
1","S11_24459346""11","ID=Manes.
11G133000.
v6.
1;Name=Manes.
11G133000;ancestorIdentifier=cassava4.
1_010591m.
g.
v4.
1","S11_24459812""11","ID=Manes.
11G135600.
v6.
1;Name=Manes.
11G135600;ancestorIdentifier=cassava4.
1_007267m.
g.
v4.
1","S11_24766817""11","ID=Manes.
11G135700.
v6.
1;Name=Manes.
11G135700;ancestorIdentifier=cassava4.
1_025919m.
g.
v4.
1","S11_24775993""11","ID=Manes.
11G136100.
v6.
1;Name=Manes.
11G136100","S11_24823863""11","ID=Manes.
11G136600.
v6.
1;Name=Manes.
11G136600;ancestorIdentifier=cassava4.
1_003129m.
g.
v4.
1","S11_24860100""11","ID=Manes.
11G137500.
v6.
1;Name=Manes.
11G137500;ancestorIdentifier=cassava4.
1_000270m.
g.
v4.
1","S11_25015445""11","ID=Manes.
11G137500.
v6.
1;Name=Manes.
11G137500;ancestorIdentifier=cassava4.
1_000270m.
g.
v4.
1","S11_25018022""11","ID=Manes.
11G141600.
v6.
1;Name=Manes.
11G141600;ancestorIdentifier=cassava4.
1_026860m.
g.
v4.
1","S11_25400330","(b)PredictedcandidategenesandassociatedSNPsforPanel1at6MAP""Chromosome","Annotatedgene(ContainsIDsfrom;versions6cassavagenome,phytozomeandversions4cassavagenome)","AssociatedSNP",,"11","ID=Manes.
11G105500.
v6.
1;Name=Manes.
11G105500","S11_19343483""11","ID=Manes.
11G105500.
v6.
1;Name=Manes.
11G105500","S11_19343507""11","ID=Manes.
11G108600.
v6.
1;Name=Manes.
11G108600;ancestorIdentifier=cassava4.
1_000863m.
g.
v4.
1","S11_20112445""11","ID=Manes.
11G110800.
v6.
1;Name=Manes.
11G110800;ancestorIdentifier=cassava4.
1_024282m.
g.
v4.
1","S11_20554366""11","ID=Manes.
11G111300.
v6.
1;Name=Manes.
11G111300;ancestorIdentifier=cassava4.
1_032419m.
g.
v4.
1","S11_20706928""11","ID=Manes.
11G113800.
v6.
1;Name=Manes.
11G113800;ancestorIdentifier=cassava4.
1_019845m.
g.
v4.
1","S11_21567735""11","ID=Manes.
11G114100.
v6.
1;Name=Manes.
11G114100;ancestorIdentifier=cassava4.
1_000763m.
g.
v4.
1","S11_21630613""11","ID=Manes.
11G115300.
v6.
1;Name=Manes.
11G115300;ancestorIdentifier=cassava4.
1_009915m.
g.
v4.
1","S11_21984488""11","ID=Manes.
11G115700.
v6.
1;Name=Manes.
11G115700;ancestorIdentifier=cassava4.
1_005125m.
g.
v4.
1","S11_22049997""11","ID=Manes.
11G116000.
v6.
1;Name=Manes.
11G116000","S11_22094095""11","ID=Manes.
11G117400.
v6.
1;Name=Manes.
11G117400;ancestorIdentifier=cassava4.
1_012889m.
g.
v4.
1","S11_22304418""11","ID=Manes.
11G119400.
v6.
1;Name=Manes.
11G119400;ancestorIdentifier=cassava4.
1_031643m.
g.
v4.
1","S11_22633492""11","ID=Manes.
11G121000.
v6.
1;Name=Manes.
11G121000;ancestorIdentifier=cassava4.
1_033047m.
g.
v4.
1","S11_22964111""11","ID=Manes.
11G121000.
v6.
1;Name=Manes.
11G121000;ancestorIdentifier=cassava4.
1_033047m.
g.
v4.
1","S11_22964131""11","ID=Manes.
11G121200.
v6.
1;Name=Manes.
11G121200;ancestorIdentifier=cassava4.
1_030740m.
g.
v4.
1","S11_23002709""11","ID=Manes.
11G121200.
v6.
1;Name=Manes.
11G121200;ancestorIdentifier=cassava4.
1_030740m.
g.
v4.
1","S11_23002741""11","ID=Manes.
11G121300.
v6.
1;Name=Manes.
11G121300","S11_23018912""11","ID=Manes.
11G122000.
v6.
1;Name=Manes.
11G122000;ancestorIdentifier=cassava4.
1_015068m.
g.
v4.
1","S11_23134278""11","ID=Manes.
11G123000.
v6.
1;Name=Manes.
11G123000;ancestorIdentifier=cassava4.
1_000375m.
g.
v4.
1","S11_23227865""11","ID=Manes.
11G123000.
v6.
1;Name=Manes.
11G123000;ancestorIdentifier=cassava4.
1_000375m.
g.
v4.
1","S11_23227874""11","ID=Manes.
11G123000.
v6.
1;Name=Manes.
11G123000;ancestorIdentifier=cassava4.
1_000375m.
g.
v4.
1","S11_23228231""11","ID=Manes.
11G123100.
v6.
1;Name=Manes.
11G123100","S11_23234841""11","ID=Manes.
11G123200.
v6.
1;Name=Manes.
11G123200;ancestorIdentifier=cassava4.
1_031128m.
g.
v4.
1","S11_23234841""11","ID=Manes.
11G125400.
v6.
1;Name=Manes.
11G125400","S11_23435609""11","ID=Manes.
11G125500.
v6.
1;Name=Manes.
11G125500","S11_23453538""11","ID=Manes.
11G127100.
v6.
1;Name=Manes.
11G127100;ancestorIdentifier=cassava4.
1_028097m.
g.
v4.
1","S11_23751929""11","ID=Manes.
11G128700.
v6.
1;Name=Manes.
11G128700;ancestorIdentifier=cassava4.
1_005491m.
g.
v4.
1","S11_23944054""11","ID=Manes.
11G129000.
v6.
1;Name=Manes.
11G129000","S11_23978170""11","ID=Manes.
11G129100.
v6.
1;Name=Manes.
11G129100;ancestorIdentifier=cassava4.
1_008995m.
g.
v4.
1","S11_24002194""11","ID=Manes.
11G130000.
v6.
1;Name=Manes.
11G130000;ancestorIdentifier=cassava4.
1_024215m.
g.
v4.
1","S11_24161059""11","ID=Manes.
11G130200.
v6.
1;Name=Manes.
11G130200;ancestorIdentifier=cassava4.
1_015979m.
g.
v4.
1","S11_24185903""11","ID=Manes.
11G130500.
v6.
1;Name=Manes.
11G130500","S11_24197620""11","ID=Manes.
11G132400.
v6.
1;Name=Manes.
11G132400;ancestorIdentifier=cassava4.
1_024866m.
g.
v4.
1","S11_24425364""11","ID=Manes.
11G132400.
v6.
1;Name=Manes.
11G132400;ancestorIdentifier=cassava4.
1_024866m.
g.
v4.
1","S11_24425401""11","ID=Manes.
11G133000.
v6.
1;Name=Manes.
11G133000;ancestorIdentifier=cassava4.
1_010591m.
g.
v4.
1","S11_24459243","(c)PredictedcandidategenesandassociatedSNPsforPanel1at12MAP""Chromosome","Annotatedgene(ContainsIDsfrom;versions6cassavagenome,phytozomeandversions4cassavagenome)","AssociatedSNP",,"5","ID=Manes.
05G178700.
v6.
1;Name=Manes.
05G178700;ancestorIdentifier=cassava4.
1_005152m.
g.
v4.
1","S5_24541067""5","ID=Manes.
05G178700.
v6.
1;Name=Manes.
05G178700;ancestorIdentifier=cassava4.
1_005152m.
g.
v4.
1","S5_24541135""5","ID=Manes.
05G178700.
v6.
1;Name=Manes.
05G178700;ancestorIdentifier=cassava4.
1_005152m.
g.
v4.
1","S5_24541233""5","ID=Manes.
05G178700.
v6.
1;Name=Manes.
05G178700;ancestorIdentifier=cassava4.
1_005152m.
g.
v4.
1","S5_24542312""11","ID=Manes.
11G121200.
v6.
1;Name=Manes.
11G121200;ancestorIdentifier=cassava4.
1_030740m.
g.
v4.
1","S11_23002741""18","ID=Manes.
18G111600.
v6.
1;Name=Manes.
18G111600","S18_10353315","(d)PredictedcandidategenesandassociatedSNPsforPanel2at6MAP""Chromosome","Annotatedgene(ContainsIDsfrom;versions6cassavagenome,phytozomeandversions4cassavagenome)","AssociatedSNP",,"12","ID=Manes.
12G076100.
v6.
1;Name=Manes.
12G076100;ancestorIdentifier=cassava4.
1_012316m.
g.
v4.
1","S12_7926132""12","ID=Manes.
12G076100.
v6.
1;Name=Manes.
12G076100;ancestorIdentifier=cassava4.
1_012316m.
g.
v4.
1","S12_7926163""12","ID=Manes.
12G076200.
v6.
1;Name=Manes.
12G076200;ancestorIdentifier=cassava4.
1_029175m.
g.
v4.
1","S12_7954248""12","ID=Manes.
12G076200.
v6.
1;Name=Manes.
12G076200;ancestorIdentifier=cassava4.
1_029175m.
g.
v4.
1","S12_7954303""12","ID=Manes.
12G078400.
v6.
1;Name=Manes.
12G078400;ancestorIdentifier=cassava4.
1_013757m.
g.
v4.
1","S12_8501618""12","ID=Manes.
12G078500.
v6.
1;Name=Manes.
12G078500;ancestorIdentifier=cassava4.
1_005562m.
g.
v4.
1","S12_8520331",,"(e)PredictedcandidategenesandassociatedSNPsforPanel2at9MAP""Chromosome","Annotatedgene(ContainsIDsfrom;versions6cassavagenome,phytozomeandversions4cassavagenome)","AssociatedSNP",,"12","ID=Manes.
12G074600.
v6.
1;Name=Manes.
12G074600;ancestorIdentifier=cassava4.
1_000903m.
g.
v4.
1","S12_7670624""12","ID=Manes.
12G074600.
v6.
1;Name=Manes.
12G074600;ancestorIdentifier=cassava4.
1_000903m.
g.
v4.
1","S12_7670661""12","ID=Manes.
12G076100.
v6.
1;Name=Manes.
12G076100;ancestorIdentifier=cassava4.
1_012316m.
g.
v4.
1","S12_7926132""12","ID=Manes.
12G076100.
v6.
1;Name=Manes.
12G076100;ancestorIdentifier=cassava4.
1_012316m.
g.
v4.
1","S12_7926163""12","ID=Manes.
12G076200.
v6.
1;Name=Manes.
12G076200;ancestorIdentifier=cassava4.
1_029175m.
g.
v4.
1","S12_7954248""12","ID=Manes.
12G076200.
v6.
1;Name=Manes.
12G076200;ancestorIdentifier=cassava4.
1_029175m.
g.
v4.
1","S12_7954303""12","ID=Manes.
12G078400.
v6.
1;Name=Manes.
12G078400;ancestorIdentifier=cassava4.
1_013757m.
g.
v4.
1","S12_8501618""11","ID=Manes.
11G121000.
v6.
1;Name=Manes.
11G121000;ancestorIdentifier=cassava4.
1_033047m.
g.
v4.
1","S11_22964131""11","ID=Manes.
11G121200.
v6.
1;Name=Manes.
11G121200;ancestorIdentifier=cassava4.
1_030740m.
g.
v4.
1","S11_23002709""11","ID=Manes.
11G122000.
v6.
1;Name=Manes.
11G122000;ancestorIdentifier=cassava4.
1_015068m.
g.
v4.
1","S11_23134278""11","ID=Manes.
11G123000.
v6.
1;Name=Manes.
11G123000;ancestorIdentifier=cassava4.
1_000375m.
g.
v4.
1","S11_23227865""11","ID=Manes.
11G123000.
v6.
1;Name=Manes.
11G123000;ancestorIdentifier=cassava4.
1_000375m.
g.
v4.
1","S11_23227874""11","ID=Manes.
11G123000.
v6.
1;Name=Manes.
11G123000;ancestorIdentifier=cassava4.
1_000375m.
g.
v4.
1","S11_23228231""11","ID=Manes.
11G123100.
v6.
1;Name=Manes.
11G123100","S11_23234841""11","ID=Manes.
11G123200.
v6.
1;Name=Manes.
11G123200;ancestorIdentifier=cassava4.
1_031128m.
g.
v4.
1","S11_23234841""11","ID=Manes.
11G125400.
v6.
1;Name=Manes.
11G125400","S11_23435609""11","ID=Manes.
11G125400.
v6.
1;Name=Manes.
11G125400","S11_23435737""11","ID=Manes.
11G125500.
v6.
1;Name=Manes.
11G125500","S11_23453538""11","ID=Manes.
11G127100.
v6.
1;Name=Manes.
11G127100;ancestorIdentifier=cassava4.
1_028097m.
g.
v4.
1","S11_23751929""11","ID=Manes.
11G128700.
v6.
1;Name=Manes.
11G128700;ancestorIdentifier=cassava4.
1_005491m.
g.
v4.
1","S11_23944054""11","ID=Manes.
11G129000.
v6.
1;Name=Manes.
11G129000","S11_23978170""11","ID=Manes.
11G129100.
v6.
1;Name=Manes.
11G129100;ancestorIdentifier=cassava4.
1_008995m.
g.
v4.
1","S11_24002194""11","ID=Manes.
11G129900.
v6.
1;Name=Manes.
11G129900;ancestorIdentifier=cassava4.
1_000426m.
g.
v4.
1","S11_24155828""11","ID=Manes.
11G129900.
v6.
1;Name=Manes.
11G129900;ancestorIdentifier=cassava4.
1_000426m.
g.
v4.
1","S11_24156328""11","ID=Manes.
11G130000.
v6.
1;Name=Manes.
11G130000;ancestorIdentifier=cassava4.
1_024215m.
g.
v4.
1","S11_24161059""11","ID=Manes.
11G130200.
v6.
1;Name=Manes.
11G130200;ancestorIdentifier=cassava4.
1_015979m.
g.
v4.
1","S11_24185903""11","ID=Manes.
11G130500.
v6.
1;Name=Manes.
11G130500","S11_24197620""11","ID=Manes.
11G131100.
v6.
1;Name=Manes.
11G131100;ancestorIdentifier=cassava4.
1_002927m.
g.
v4.
1","S11_24291718""11","ID=Manes.
11G131100.
v6.
1;Name=Manes.
11G131100;ancestorIdentifier=cassava4.
1_002927m.
g.
v4.
1","S11_24291737""11","ID=Manes.
11G131500.
v6.
1;Name=Manes.
11G131500;ancestorIdentifier=cassava4.
1_003125m.
g.
v4.
1","S11_24332904",,"(f)PredictedcandidategenesandassociatedSNPsforcombinedPanelsat3MAP""Chromosome","Annotatedgene(ContainsIDsfrom;versions6cassavagenome,phytozomeandversions4cassavagenome)","AssociatedSNP",,"11","ID=Manes.
11G101900.
v6.
1;Name=Manes.
11G101900;ancestorIdentifier=cassava4.
1_000923m.
g.
v4.
1","S11_18198155""11","ID=Manes.
11G104100.
v6.
1;Name=Manes.
11G104100","S11_18986128""11","ID=Manes.
11G104100.
v6.
1;Name=Manes.
11G104100","S11_18986599""11","ID=Manes.
11G105300.
v6.
1;Name=Manes.
11G105300;ancestorIdentifier=cassava4.
1_021582m.
g.
v4.
1","S11_19286159""11","ID=Manes.
11G105500.
v6.
1;Name=Manes.
11G105500","S11_19366766""11","ID=Manes.
11G105500.
v6.
1;Name=Manes.
11G105500","S11_19366851""11","ID=Manes.
11G107500.
v6.
1;Name=Manes.
11G107500","S11_19872305""11","ID=Manes.
11G110800.
v6.
1;Name=Manes.
11G110800;ancestorIdentifier=cassava4.
1_024282m.
g.
v4.
1","S11_20554366""11","ID=Manes.
11G111300.
v6.
1;Name=Manes.
11G111300;ancestorIdentifier=cassava4.
1_032419m.
g.
v4.
1","S11_20706928""11","ID=Manes.
11G112500.
v6.
1;Name=Manes.
11G112500;ancestorIdentifier=cassava4.
1_013401m.
g.
v4.
1","S11_20950074""11","ID=Manes.
11G113800.
v6.
1;Name=Manes.
11G113800;ancestorIdentifier=cassava4.
1_019845m.
g.
v4.
1","S11_21567735""11","ID=Manes.
11G114100.
v6.
1;Name=Manes.
11G114100;ancestorIdentifier=cassava4.
1_000763m.
g.
v4.
1","S11_21630613""11","ID=Manes.
11G115300.
v6.
1;Name=Manes.
11G115300;ancestorIdentifier=cassava4.
1_009915m.
g.
v4.
1","S11_21984488""11","ID=Manes.
11G115700.
v6.
1;Name=Manes.
11G115700;ancestorIdentifier=cassava4.
1_005125m.
g.
v4.
1","S11_22049997""11","ID=Manes.
11G116000.
v6.
1;Name=Manes.
11G116000","S11_22094095""11","ID=Manes.
11G116900.
v6.
1;Name=Manes.
11G116900;ancestorIdentifier=cassava4.
1_005805m.
g.
v4.
1","S11_22205915""11","ID=Manes.
11G117400.
v6.
1;Name=Manes.
11G117400;ancestorIdentifier=cassava4.
1_012889m.
g.
v4.
1","S11_22304418""11","ID=Manes.
11G118300.
v6.
1;Name=Manes.
11G118300;ancestorIdentifier=cassava4.
1_004758m.
g.
v4.
1","S11_22459557""11","ID=Manes.
11G119400.
v6.
1;Name=Manes.
11G119400;ancestorIdentifier=cassava4.
1_031643m.
g.
v4.
1","S11_22633492""11","ID=Manes.
11G121000.
v6.
1;Name=Manes.
11G121000;ancestorIdentifier=cassava4.
1_033047m.
g.
v4.
1","S11_22964131""11","ID=Manes.
11G121200.
v6.
1;Name=Manes.
11G121200;ancestorIdentifier=cassava4.
1_030740m.
g.
v4.
1","S11_23001050""11","ID=Manes.
11G121200.
v6.
1;Name=Manes.
11G121200;ancestorIdentifier=cassava4.
1_030740m.
g.
v4.
1","S11_23002709""11","ID=Manes.
11G121200.
v6.
1;Name=Manes.
11G121200;ancestorIdentifier=cassava4.
1_030740m.
g.
v4.
1","S11_23002741""11","ID=Manes.
11G121300.
v6.
1;Name=Manes.
11G121300","S11_23018912""11","ID=Manes.
11G122000.
v6.
1;Name=Manes.
11G122000;ancestorIdentifier=cassava4.
1_015068m.
g.
v4.
1","S11_23134278""11","ID=Manes.
11G123000.
v6.
1;Name=Manes.
11G123000;ancestorIdentifier=cassava4.
1_000375m.
g.
v4.
1","S11_23227865""11","ID=Manes.
11G123000.
v6.
1;Name=Manes.
11G123000;ancestorIdentifier=cassava4.
1_000375m.
g.
v4.
1","S11_23227874""11","ID=Manes.
11G123000.
v6.
1;Name=Manes.
11G123000;ancestorIdentifier=cassava4.
1_000375m.
g.
v4.
1","S11_23228231""11","ID=Manes.
11G123100.
v6.
1;Name=Manes.
11G123100","S11_23234841""11","ID=Manes.
11G123100.
v6.
1;Name=Manes.
11G123100","S11_23238187""11","ID=Manes.
11G123200.
v6.
1;Name=Manes.
11G123200;ancestorIdentifier=cassava4.
1_031128m.
g.
v4.
1","S11_23234841""11","ID=Manes.
11G125400.
v6.
1;Name=Manes.
11G125400","S11_23435609""11","ID=Manes.
11G125500.
v6.
1;Name=Manes.
11G125500","S11_23453538""11","ID=Manes.
11G126100.
v6.
1;Name=Manes.
11G126100;ancestorIdentifier=cassava4.
1_005626m.
g.
v4.
1","S11_23574768""11","ID=Manes.
11G127100.
v6.
1;Name=Manes.
11G127100;ancestorIdentifier=cassava4.
1_028097m.
g.
v4.
1","S11_23751929""11","ID=Manes.
11G128700.
v6.
1;Name=Manes.
11G128700;ancestorIdentifier=cassava4.
1_005491m.
g.
v4.
1","S11_23944054""11","ID=Manes.
11G129000.
v6.
1;Name=Manes.
11G129000","S11_23978170""11","ID=Manes.
11G129100.
v6.
1;Name=Manes.
11G129100;ancestorIdentifier=cassava4.
1_008995m.
g.
v4.
1","S11_24002194""11","ID=Manes.
11G129900.
v6.
1;Name=Manes.
11G129900;ancestorIdentifier=cassava4.
1_000426m.
g.
v4.
1","S11_24155828""11","ID=Manes.
11G129900.
v6.
1;Name=Manes.
11G129900;ancestorIdentifier=cassava4.
1_000426m.
g.
v4.
1","S11_24156328""11","ID=Manes.
11G130000.
v6.
1;Name=Manes.
11G130000;ancestorIdentifier=cassava4.
1_024215m.
g.
v4.
1","S11_24161059""11","ID=Manes.
11G130200.
v6.
1;Name=Manes.
11G130200;ancestorIdentifier=cassava4.
1_015979m.
g.
v4.
1","S11_24185903""11","ID=Manes.
11G130500.
v6.
1;Name=Manes.
11G130500","S11_24197620""11","ID=Manes.
11G131100.
v6.
1;Name=Manes.
11G131100;ancestorIdentifier=cassava4.
1_002927m.
g.
v4.
1","S11_24291718""11","ID=Manes.
11G131100.
v6.
1;Name=Manes.
11G131100;ancestorIdentifier=cassava4.
1_002927m.
g.
v4.
1","S11_24291737""11","ID=Manes.
11G131500.
v6.
1;Name=Manes.
11G131500;ancestorIdentifier=cassava4.
1_003125m.
g.
v4.
1","S11_24332904""11","ID=Manes.
11G131900.
v6.
1;Name=Manes.
11G131900;ancestorIdentifier=cassava4.
1_033611m.
g.
v4.
1","S11_24372646""11","ID=Manes.
11G132400.
v6.
1;Name=Manes.
11G132400;ancestorIdentifier=cassava4.
1_024866m.
g.
v4.
1","S11_24425364""11","ID=Manes.
11G132400.
v6.
1;Name=Manes.
11G132400;ancestorIdentifier=cassava4.
1_024866m.
g.
v4.
1","S11_24425401""11","ID=Manes.
11G133000.
v6.
1;Name=Manes.
11G133000;ancestorIdentifier=cassava4.
1_010591m.
g.
v4.
1","S11_24459243""11","ID=Manes.
11G133000.
v6.
1;Name=Manes.
11G133000;ancestorIdentifier=cassava4.
1_010591m.
g.
v4.
1","S11_24459346""11","ID=Manes.
11G133000.
v6.
1;Name=Manes.
11G133000;ancestorIdentifier=cassava4.
1_010591m.
g.
v4.
1","S11_24459812""11","ID=Manes.
11G135600.
v6.
1;Name=Manes.
11G135600;ancestorIdentifier=cassava4.
1_007267m.
g.
v4.
1","S11_24766817""11","ID=Manes.
11G135700.
v6.
1;Name=Manes.
11G135700;ancestorIdentifier=cassava4.
1_025919m.
g.
v4.
1","S11_24775993""11","ID=Manes.
11G136100.
v6.
1;Name=Manes.
11G136100","S11_24823863""11","ID=Manes.
11G136600.
v6.
1;Name=Manes.
11G136600;ancestorIdentifier=cassava4.
1_003129m.
g.
v4.
1","S11_24860100""11","ID=Manes.
11G137500.
v6.
1;Name=Manes.
11G137500;ancestorIdentifier=cassava4.
1_000270m.
g.
v4.
1","S11_25015445""11","ID=Manes.
11G137500.
v6.
1;Name=Manes.
11G137500;ancestorIdentifier=cassava4.
1_000270m.
g.
v4.
1","S11_25017938""11","ID=Manes.
11G137500.
v6.
1;Name=Manes.
11G137500;ancestorIdentifier=cassava4.
1_000270m.
g.
v4.
1","S11_25018022""11","ID=Manes.
11G139600.
v6.
1;Name=Manes.
11G139600;ancestorIdentifier=cassava4.
1_000837m.
g.
v4.
1","S11_25203456""11","ID=Manes.
11G140200.
v6.
1;Name=Manes.
11G140200","S11_25261039""11","ID=Manes.
11G140200.
v6.
1;Name=Manes.
11G140200","S11_25261199","(g)PredictedcandidategenesandassociatedSNPsforcombinedPanelsat6MAP""Chromosome","Annotatedgene(ContainsIDsfrom;versions6cassavagenome,phytozomeandversions4cassavagenome)","AssociatedSNP",,"12","ID=Manes.
12G076100.
v6.
1;Name=Manes.
12G076100;ancestorIdentifier=cassava4.
1_012316m.
g.
v4.
1","S12_7926132""12","ID=Manes.
12G076100.
v6.
1;Name=Manes.
12G076100;ancestorIdentifier=cassava4.
1_012316m.
g.
v4.
1","S12_7926163""12","ID=Manes.
12G076200.
v6.
1;Name=Manes.
12G076200;ancestorIdentifier=cassava4.
1_029175m.
g.
v4.
1","S12_7954248""12","ID=Manes.
12G076200.
v6.
1;Name=Manes.
12G076200;ancestorIdentifier=cassava4.
1_029175m.
g.
v4.
1","S12_7954303""12","ID=Manes.
12G076500.
v6.
1;Name=Manes.
12G076500;ancestorIdentifier=cassava4.
1_034346m.
g.
v4.
1","S12_8071420""12","ID=Manes.
12G078400.
v6.
1;Name=Manes.
12G078400;ancestorIdentifier=cassava4.
1_013757m.
g.
v4.
1","S12_8501618""12","ID=Manes.
12G081700.
v6.
1;Name=Manes.
12G081700;ancestorIdentifier=cassava4.
1_007079m.
g.
v4.
1","S12_9608777""12","ID=Manes.
12G082700.
v6.
1;Name=Manes.
12G082700;ancestorIdentifier=cassava4.
1_020200m.
g.
v4.
1","S12_9994646""12","ID=Manes.
12G082700.
v6.
1;Name=Manes.
12G082700;ancestorIdentifier=cassava4.
1_020200m.
g.
v4.
1","S12_9994654""11","ID=Manes.
11G048600.
v6.
1;Name=Manes.
11G048600","S11_4654082""11","ID=Manes.
11G121000.
v6.
1;Name=Manes.
11G121000;ancestorIdentifier=cassava4.
1_033047m.
g.
v4.
1","S11_22964111""11","ID=Manes.
11G121200.
v6.
1;Name=Manes.
11G121200;ancestorIdentifier=cassava4.
1_030740m.
g.
v4.
1","S11_23002709""11","ID=Manes.
11G122000.
v6.
1;Name=Manes.
11G122000;ancestorIdentifier=cassava4.
1_015068m.
g.
v4.
1","S11_23134278""11","ID=Manes.
11G123000.
v6.
1;Name=Manes.
11G123000;ancestorIdentifier=cassava4.
1_000375m.
g.
v4.
1","S11_23228231""11","ID=Manes.
11G123100.
v6.
1;Name=Manes.
11G123100","S11_23234841""11","ID=Manes.
11G123200.
v6.
1;Name=Manes.
11G123200;ancestorIdentifier=cassava4.
1_031128m.
g.
v4.
1","S11_23234841""11","ID=Manes.
11G125400.
v6.
1;Name=Manes.
11G125400","S11_23435609""11","ID=Manes.
11G125400.
v6.
1;Name=Manes.
11G125400","S11_23435737""11","ID=Manes.
11G125500.
v6.
1;Name=Manes.
11G125500","S11_23453538""11","ID=Manes.
11G127100.
v6.
1;Name=Manes.
11G127100;ancestorIdentifier=cassava4.
1_028097m.
g.
v4.
1","S11_23751929""11","ID=Manes.
11G128700.
v6.
1;Name=Manes.
11G128700;ancestorIdentifier=cassava4.
1_005491m.
g.
v4.
1","S11_23944054""11","ID=Manes.
11G129000.
v6.
1;Name=Manes.
11G129000","S11_23978170""11","ID=Manes.
11G129100.
v6.
1;Name=Manes.
11G129100;ancestorIdentifier=cassava4.
1_008995m.
g.
v4.
1","S11_24002194""11","ID=Manes.
11G130000.
v6.
1;Name=Manes.
11G130000;ancestorIdentifier=cassava4.
1_024215m.
g.
v4.
1","S11_24161059""11","ID=Manes.
11G130200.
v6.
1;Name=Manes.
11G130200;ancestorIdentifier=cassava4.
1_015979m.
g.
v4.
1","S11_24185903""11","ID=Manes.
11G130500.
v6.
1;Name=Manes.
11G130500","S11_24197620""11","ID=Manes.
11G131100.
v6.
1;Name=Manes.
11G131100;ancestorIdentifier=cassava4.
1_002927m.
g.
v4.
1","S11_24291718""11","ID=Manes.
11G131100.
v6.
1;Name=Manes.
11G131100;ancestorIdentifier=cassava4.
1_002927m.
g.
v4.
1","S11_24291737""11","ID=Manes.
11G131500.
v6.
1;Name=Manes.
11G131500;ancestorIdentifier=cassava4.
1_003125m.
g.
v4.
1","S11_24332904""11","ID=Manes.
11G131900.
v6.
1;Name=Manes.
11G131900;ancestorIdentifier=cassava4.
1_033611m.
g.
v4.
1","S11_24372646""11","ID=Manes.
11G132400.
v6.
1;Name=Manes.
11G132400;ancestorIdentifier=cassava4.
1_024866m.
g.
v4.
1","S11_24425364""11","ID=Manes.
11G132400.
v6.
1;Name=Manes.
11G132400;ancestorIdentifier=cassava4.
1_024866m.
g.
v4.
1","S11_24425401""11","ID=Manes.
11G133000.
v6.
1;Name=Manes.
11G133000;ancestorIdentifier=cassava4.
1_010591m.
g.
v4.
1","S11_24459243""11","ID=Manes.
11G133000.
v6.
1;Name=Manes.
11G133000;ancestorIdentifier=cassava4.
1_010591m.
g.
v4.
1","S11_24459346""11","ID=Manes.
11G133000.
v6.
1;Name=Manes.
11G133000;ancestorIdentifier=cassava4.
1_010591m.
g.
v4.
1","S11_24459812""11","ID=Manes.
11G137400.
v6.
1;Name=Manes.
11G137400;ancestorIdentifier=cassava4.
1_000749m.
g.
v4.
1","S11_25011182""SupplementarytableS5.
Explainedvarianceofphenotypictraits.
DetailsshownarereferencetophitSNP,the-log10(pval)(score),chromosomeandexplainedreferencetophitSNP,the-log10(pval)(score),chromosomeandexplainedvariance.
",,,,,,"Panel1","Trait","score","referenceSNP","chromosome","explainedvariance","CBSD3S","9.
386101","S11_23453538","CHR11","0.
1641395","CBSD6S","12.
72023","S11_23002709","CHR11","0.
2780037","CBSDRS","6.
814911","S5_24541233","CHR5","0.
0807008",,"6.
828794","S11_23002741","CHR11","0.
06417656",,"6.
933342","S18_10353315","CHR18","0.
09870528","Panel2","Trait","score","referenceSNP","chromosome","explainedvariance","CBSD6S","6.
77633","S12_7926132","CHR12","0.
04900569",,"11.
62656","S4_19367686","CHR4","0.
09192094","CBSD9S","7.
217546","S12_8501618","CHR12","0.
06261128",,"7.
845193","S11_23234841","CHR11","0.
0572867",,"7.
348712","S4_23356015","CHR4","0.
06557232","Combineddataset","Trait","score","referenceSNP","chromosome","explainedvariance","CBSD3S","9.
864216","S11_23751929","CHR11","0.
05841018","CBSD6S","13.
58238","S4_18707851","CHR4","0.
09246913",,"9.
52924","S11_24197620","CHR11","0.
04596445",,"8.
488581","S12_7926132","CHR12","0.
04598299","CBSD3S=CBSDseverityscoredat3MAP,CBSD6S=CBSDseverityscoredat6MAP,CBSDRS=CBSDseverityscoredat12MAP",,,,,,,,,,,,,,,,,,,"SupplementarytableS6.
Genomicpredictionaccuracyvalues.
(A)Crossvalidationresultsusing7GSmodelsforCBSDseveritypredictionof3MAPCBSD3S,6MAPCBSD6SandRootnecrosis(CBSDRS)(B)Multi-kernelGBLUPcrossvalidationbyfittingthreekernelsconstructedwithnon-overlappingSNPs(MAF>0.
01)fromchromosomes4,11andSNPsfromtheotherchromosomes.
RKHS=ReproducingkernelHilbertspacesregression,TotalaccuracyistheaccuracyobtainedbyfollowingtheGBLUPmultikernelapproach.

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